[
    {
        "name": "SC_ATAC_COUNTER_CS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SC_ATAC_COUNTER.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "SC_ATAC_COUNTER.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix_mex",
                            "type": "path",
                            "valexp": "SC_ATAC_COUNTER.filtered_tf_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix_mex",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "SC_ATAC_COUNTER.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_bam",
                            "type": "bam",
                            "valexp": "SC_ATAC_COUNTER.possorted_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_bam",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "SC_ATAC_COUNTER.raw_peak_bc_matrix",
                            "mode": "reference",
                            "output": "raw_matrix",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SC_ATAC_COUNTER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "SC_ATAC_COUNTER.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "SC_ATAC_COUNTER.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "SC_ATAC_COUNTER.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "valexp": "SC_ATAC_COUNTER.cloupe",
                            "mode": "reference",
                            "output": "output_for_cloupe",
                            "sweep": false,
                            "sweepRootId": "cloupe",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS/fork0/join-uf507f838ee/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "peak_annotation",
                            "type": "tsv",
                            "valexp": "SC_ATAC_COUNTER.peak_annotation",
                            "mode": "reference",
                            "output": "peak_annotation",
                            "sweep": false,
                            "sweepRootId": "peak_annotation",
                            "node": "ANNOTATE_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join-uf507f81bfb/files/peak_annotation.tsv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_bam_index",
                            "type": "bam.bai",
                            "valexp": "SC_ATAC_COUNTER.possorted_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_bam_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "SC_ATAC_COUNTER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "SC_ATAC_COUNTER.filtered_peak_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix_mex",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "summary_csv",
                            "type": "csv",
                            "valexp": "SC_ATAC_COUNTER.summary_csv",
                            "mode": "reference",
                            "output": "summary_csv",
                            "sweep": false,
                            "sweepRootId": "summary_csv",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SC_ATAC_COUNTER.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "CREATE_WEBSUMMARY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/chnk0-uf507f838ee/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "SC_ATAC_COUNTER.raw_peak_bc_matrix_mex",
                            "mode": "reference",
                            "output": "raw_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix_mex",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix_mex",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "SC_ATAC_COUNTER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "adapters",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "adapters",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "ME": "AGATGTGTATAAGAGACAG",
                                "MErc": "CTGTCTCTTATACACATCT"
                            },
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_bam",
                            "type": "bam",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.possorted_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_bam",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "_SC_ATAC_REPORTER.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "possorted_bam_index",
                            "type": "bam.bai",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.possorted_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_bam_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.raw_peak_bc_matrix_mex",
                            "mode": "reference",
                            "output": "raw_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix_mex",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.filtered_peak_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix_mex",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "_SC_ATAC_ANALYZER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "_SC_ATAC_ANALYZER.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "valexp": "CLOUPE_PREPROCESS.output_for_cloupe",
                            "mode": "reference",
                            "output": "output_for_cloupe",
                            "sweep": false,
                            "sweepRootId": "cloupe",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS/fork0/join-uf507f838ee/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "summary_csv",
                            "type": "csv",
                            "valexp": "_SC_ATAC_REPORTER.summary_csv",
                            "mode": "reference",
                            "output": "summary_csv",
                            "sweep": false,
                            "sweepRootId": "summary_csv",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "peak_annotation",
                            "type": "tsv",
                            "valexp": "_SC_ATAC_ANALYZER.peak_annotation",
                            "mode": "reference",
                            "output": "peak_annotation",
                            "sweep": false,
                            "sweepRootId": "peak_annotation",
                            "node": "ANNOTATE_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join-uf507f81bfb/files/peak_annotation.tsv",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "_SC_ATAC_REPORTER.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "CREATE_WEBSUMMARY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/chnk0-uf507f838ee/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.raw_peak_bc_matrix",
                            "mode": "reference",
                            "output": "raw_matrix",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix_mex",
                            "type": "path",
                            "valexp": "_SC_ATAC_ANALYZER.filtered_tf_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix_mex",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix_mex",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.CLOUPE_PREPROCESS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ATAC_COUNTER_PREFLIGHT",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.ATAC_COUNTER_PREFLIGHT",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "self.trim_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "ATAC_COUNTER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/preflight/atac_counter"
    },
    {
        "name": "ATAC_COUNTER_PREFLIGHT_LOCAL",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.ATAC_COUNTER_PREFLIGHT_LOCAL",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT_LOCAL",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT_LOCAL",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT_LOCAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT_LOCAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/ATAC_COUNTER_PREFLIGHT_LOCAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "self.trim_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "ATAC_COUNTER_PREFLIGHT_LOCAL",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/preflight/atac_counter"
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 15,
                    "__vmem_gb": 18
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/CLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggregation_csv",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pipestance_type",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "SC_ATAC_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "feature_barcode_matrix",
                            "type": "h5",
                            "valexp": "_SC_ATAC_ANALYZER.feature_bc_matrix",
                            "mode": "reference",
                            "output": "feature_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "feature_barcode_matrix",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "h5",
                            "valexp": "_SC_ATAC_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis.h5",
                            "waiting": false
                        },
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.basic_summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "metrics_json",
                            "node": "GENERATE_SEQUENCING_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join-uf507f7e21b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "gem_group_index_json",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/cloupe/atac_cloupe_preprocess"
    },
    {
        "name": "_BASIC_SC_ATAC_COUNTER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "adapters",
                            "type": "map",
                            "valexp": "self.adapters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "adapters",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "ME": "AGATGTGTATAAGAGACAG",
                                "MErc": "CTGTCTCTTATACACATCT"
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "self.trim_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_bam",
                            "type": "bam",
                            "valexp": "_SORT_AND_MARK_DUPS.possorted_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_bam",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "GENERATE_PEAK_MATRIX.raw_matrix",
                            "mode": "reference",
                            "output": "raw_matrix",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "cut_sites",
                            "type": "bedgraph",
                            "valexp": "_PEAK_CALLER.cut_sites",
                            "mode": "reference",
                            "output": "cut_sites",
                            "sweep": false,
                            "sweepRootId": "cut_sites",
                            "node": "COUNT_CUT_SITES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/join-uf507f812ea/files/cut_sites.bedgraph",
                            "waiting": false
                        },
                        {
                            "id": "read_paired_bam",
                            "type": "bam",
                            "valexp": "_SORT_AND_MARK_DUPS.read_paired_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "read_paired_bam",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "lot_info",
                            "type": "json",
                            "valexp": "_ALIGNER.lot_info",
                            "mode": "reference",
                            "output": "lot_info",
                            "sweep": false,
                            "sweepRootId": "lot_info",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/lot_info.json",
                            "waiting": false
                        },
                        {
                            "id": "downsample_info",
                            "type": "json",
                            "valexp": "_ALIGNER.downsample_info",
                            "mode": "reference",
                            "output": "downsample_info",
                            "sweep": false,
                            "sweepRootId": "downsample_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/chnk0-uf507f71b78/files/downsample_info.json",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "csv",
                            "valexp": "_PRODUCE_CELL_BARCODES.cell_barcodes",
                            "mode": "reference",
                            "output": "cell_barcodes",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "GENERATE_PEAK_MATRIX.raw_matrix_mex",
                            "mode": "reference",
                            "output": "raw_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "raw_peak_bc_matrix_mex",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix_mex",
                            "type": "path",
                            "valexp": "FILTER_PEAK_MATRIX.filtered_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix_mex",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "possorted_bam_index",
                            "type": "bam.bai",
                            "valexp": "_SORT_AND_MARK_DUPS.possorted_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_bam_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_summary",
                            "type": "json",
                            "valexp": "_PRODUCE_CELL_BARCODES.cell_calling_summary",
                            "mode": "reference",
                            "output": "merged_summary",
                            "sweep": false,
                            "sweepRootId": "cell_calling_summary",
                            "node": "MERGE_CELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/chnk0-uf507f823cd/files/merged_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "excluded_barcodes",
                            "type": "json",
                            "valexp": "_PRODUCE_CELL_BARCODES.excluded_barcodes",
                            "mode": "reference",
                            "output": "excluded_barcodes",
                            "sweep": false,
                            "sweepRootId": "excluded_barcodes",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0-uf507f8234b/files/excluded_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "peak_metrics",
                            "type": "json",
                            "valexp": "_PEAK_CALLER.peak_metrics",
                            "mode": "reference",
                            "output": "peak_metrics",
                            "sweep": false,
                            "sweepRootId": "peak_metrics",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peak_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_PEAK_CALLER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "FILTER_PEAK_MATRIX.filtered_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_mapping",
                            "type": "csv",
                            "valexp": "_SORT_AND_MARK_DUPS.singlecell_mapping",
                            "mode": "reference",
                            "output": "singlecell_mapping",
                            "sweep": false,
                            "sweepRootId": "singlecell_mapping",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/singlecell_mapping.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_cells",
                            "type": "csv",
                            "valexp": "_PRODUCE_CELL_BARCODES.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell_cells",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "read_counts",
                            "type": "json",
                            "valexp": "_ALIGNER.read_counts",
                            "mode": "reference",
                            "output": "read_counts",
                            "sweep": false,
                            "sweepRootId": "read_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/read_counts.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.GENERATE_PEAK_MATRIX",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.FILTER_PEAK_MATRIX",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "FILTER_PEAK_MATRIX",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.FILTER_PEAK_MATRIX",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "csv",
                            "valexp": "_PRODUCE_CELL_BARCODES.cell_barcodes",
                            "mode": "reference",
                            "output": "cell_barcodes",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_matrix",
                            "type": "h5",
                            "valexp": "GENERATE_PEAK_MATRIX.raw_matrix",
                            "mode": "reference",
                            "output": "raw_matrix",
                            "sweep": false,
                            "sweepRootId": "raw_matrix",
                            "node": "GENERATE_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join-uf507f81bfb/files/raw_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.FILTER_PEAK_MATRIX"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.GENERATE_PEAK_MATRIX",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.FILTER_PEAK_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/filter_peak_matrix"
    },
    {
        "name": "GENERATE_PEAK_MATRIX",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.GENERATE_PEAK_MATRIX",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_0.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_1.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_2.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_3.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_4.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_5.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_6.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_7.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_8.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_9.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_10.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_11.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_12.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_13.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_14.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_15.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_16.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_17.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_18.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_19.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_20.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_21.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_22.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_23.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_24.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_25.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_26.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_27.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_28.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/split-uf507f81bfb/files/barcode_29.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/GENERATE_PEAK_MATRIX/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_PEAK_CALLER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.GENERATE_PEAK_MATRIX"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER.GENERATE_PEAK_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/generate_peak_matrix"
    },
    {
        "name": "_ALIGNER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "read_group_sample",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "self.trim_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "adapters",
                            "type": "map",
                            "valexp": "self.adapters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "adapters",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "ME": "AGATGTGTATAAGAGACAG",
                                "MErc": "CTGTCTCTTATACACATCT"
                            },
                            "waiting": false
                        },
                        {
                            "id": "fastq_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "align",
                            "type": "bam",
                            "valexp": "ALIGN_READS",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk00-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk01-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk02-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk03-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk04-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk05-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk06-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk07-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk08-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk09-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk10-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk11-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk12-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk13-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk14-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk15-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk16-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk17-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk18-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk19-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk20-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk21-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk22-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk23-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk24-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk25-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk26-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk27-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk28-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk29-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk30-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk31-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk32-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk33-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk34-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk35-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk36-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk37-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk38-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk39-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk40-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk41-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk42-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk43-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk44-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk45-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk46-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk47-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk48-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk49-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk50-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk51-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk52-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk53-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk54-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk55-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk56-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk57-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk58-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk59-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk60-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk61-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk62-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk63-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk64-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk65-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk66-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk67-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk68-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk69-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk70-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk71-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk72-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk73-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk74-uf507f75580/files/default.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "TRIM_READS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bc_counts",
                            "type": "json",
                            "valexp": "TRIM_READS.bc_counts",
                            "mode": "reference",
                            "output": "bc_counts",
                            "sweep": false,
                            "sweepRootId": "bc_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/bc_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "lot_info",
                            "type": "json",
                            "valexp": "TRIM_READS.lot_info",
                            "mode": "reference",
                            "output": "lot_info",
                            "sweep": false,
                            "sweepRootId": "lot_info",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/lot_info.json",
                            "waiting": false
                        },
                        {
                            "id": "read_counts",
                            "type": "json",
                            "valexp": "TRIM_READS.read_counts",
                            "mode": "reference",
                            "output": "read_counts",
                            "sweep": false,
                            "sweepRootId": "read_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/read_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "downsample_info",
                            "type": "json",
                            "valexp": "SETUP_CHUNKS.downsample_info",
                            "mode": "reference",
                            "output": "downsample_info",
                            "sweep": false,
                            "sweepRootId": "downsample_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/chnk0-uf507f71b78/files/downsample_info.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.ALIGN_READS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.TRIM_READS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.SETUP_CHUNKS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ALIGN_READS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.ALIGN_READS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 4,
                            "__vmem_gb": 14,
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "read_group_sample",
                            "type": "string",
                            "valexp": "self.read_group_sample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "num_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_threads",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "TRIM_READS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aligner",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": "bwa",
                            "waiting": false
                        },
                        {
                            "id": "aligner_method",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aligner_method",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": "MEM",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.TRIM_READS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.ALIGN_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/align_reads"
    },
    {
        "name": "SETUP_CHUNKS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.SETUP_CHUNKS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input_mode",
                            "type": "string",
                            "valexp": "self.fastq_mode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "fastq_mode",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "ILMN_BCL2FASTQ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "downsample",
                            "type": "map",
                            "valexp": "self.downsample",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "downsample",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/setup_chunks"
    },
    {
        "name": "TRIM_READS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.TRIM_READS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk": {
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "subsample_rate": 1.0,
                                "barcode": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R2_001.fastq.gz",
                                "bc_length": 16,
                                "read2": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R3_001.fastq.gz",
                                "read1": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R1_001.fastq.gz",
                                "sample_index": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_I1_001.fastq.gz",
                                "bc_in_read": 1,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "subsample_rate": 1.0,
                                    "barcode": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R2_001.fastq.gz",
                                    "bc_length": 16,
                                    "read2": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R3_001.fastq.gz",
                                    "read1": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_R1_001.fastq.gz",
                                    "sample_index": "/share/dstep/data/10X_ATAC_Lung/10X_ATAC_Lung_S1_L007_I1_001.fastq.gz",
                                    "bc_in_read": 1,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "max_read_num",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_read_num",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        },
                        {
                            "id": "trim_def",
                            "type": "map",
                            "valexp": "self.trim_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "trim_def",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "R1": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "R2": {
                                    "3prime": [
                                        "MErc"
                                    ]
                                },
                                "discard_untrimmed": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "adapters",
                            "type": "map",
                            "valexp": "self.adapters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "adapters",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "ME": "AGATGTGTATAAGAGACAG",
                                "MErc": "CTGTCTCTTATACACATCT"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.SETUP_CHUNKS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER.TRIM_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/trim_reads"
    },
    {
        "name": "_PEAK_CALLER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cut_sites",
                            "type": "bedgraph",
                            "valexp": "COUNT_CUT_SITES.cut_sites",
                            "mode": "reference",
                            "output": "cut_sites",
                            "sweep": false,
                            "sweepRootId": "cut_sites",
                            "node": "COUNT_CUT_SITES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/join-uf507f812ea/files/cut_sites.bedgraph",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "DETECT_PEAKS.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "peak_metrics",
                            "type": "json",
                            "valexp": "DETECT_PEAKS.peak_metrics",
                            "mode": "reference",
                            "output": "peak_metrics",
                            "sweep": false,
                            "sweepRootId": "peak_metrics",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peak_metrics.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.COUNT_CUT_SITES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.DETECT_PEAKS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "COUNT_CUT_SITES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.COUNT_CUT_SITES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr6"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr8"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr9"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr10"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr11"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr12"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr13"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr14"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr15"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr16"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr17"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr18"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chr19"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chrX"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "contig": "chrY"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.COUNT_CUT_SITES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/count_cut_sites"
    },
    {
        "name": "DETECT_PEAKS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.DETECT_PEAKS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr1",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr2",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr3",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr4",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr5",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr6",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr7",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr8",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr9",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr10",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr11",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr12",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr13",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr14",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr15",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr16",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr17",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr18",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chr19",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chrX",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "contig": "chrY",
                            "params": [
                                0.030164593456223632,
                                21.54649411462082,
                                0.18464675048570448,
                                0.0018943109346581275,
                                0.2600481678747846,
                                0.7132904903132214
                            ],
                            "threshold": 119
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "count_dict",
                            "type": "pickle",
                            "valexp": "COUNT_CUT_SITES.count_dict",
                            "mode": "reference",
                            "output": "count_dict",
                            "sweep": false,
                            "sweepRootId": "count_dict",
                            "node": "COUNT_CUT_SITES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/join-uf507f812ea/files/count_dict.pickle",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "cut_sites",
                            "type": "bedgraph",
                            "valexp": "COUNT_CUT_SITES.cut_sites",
                            "mode": "reference",
                            "output": "cut_sites",
                            "sweep": false,
                            "sweepRootId": "cut_sites",
                            "node": "COUNT_CUT_SITES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/COUNT_CUT_SITES/fork0/join-uf507f812ea/files/cut_sites.bedgraph",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.COUNT_CUT_SITES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER.DETECT_PEAKS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/detect_peaks"
    },
    {
        "name": "_PRODUCE_CELL_BARCODES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_SORT_AND_MARK_DUPS.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_PEAK_CALLER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cell_barcodes",
                            "type": "csv",
                            "valexp": "DETECT_CELL_BARCODES.cell_barcodes",
                            "mode": "reference",
                            "output": "cell_barcodes",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "excluded_barcodes",
                            "type": "json",
                            "valexp": "MERGE_EXCLUDED_BARCODES.excluded_barcodes",
                            "mode": "reference",
                            "output": "excluded_barcodes",
                            "sweep": false,
                            "sweepRootId": "excluded_barcodes",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0-uf507f8234b/files/excluded_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "DETECT_CELL_BARCODES.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_summary",
                            "type": "json",
                            "valexp": "MERGE_CELL_METRICS.merged_summary",
                            "mode": "reference",
                            "output": "merged_summary",
                            "sweep": false,
                            "sweepRootId": "cell_calling_summary",
                            "node": "MERGE_CELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/chnk0-uf507f823cd/files/merged_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "fragment_lengths",
                            "type": "json",
                            "valexp": "REMOVE_LOW_TARGETING_BARCODES.fragment_lengths",
                            "mode": "reference",
                            "output": "fragment_lengths",
                            "sweep": false,
                            "sweepRootId": "fragment_lengths",
                            "node": "REMOVE_LOW_TARGETING_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/fragment_lengths.json",
                            "waiting": false
                        },
                        {
                            "id": "covered_bases",
                            "type": "json",
                            "valexp": "REMOVE_LOW_TARGETING_BARCODES.covered_bases",
                            "mode": "reference",
                            "output": "covered_bases",
                            "sweep": false,
                            "sweepRootId": "covered_bases",
                            "node": "REMOVE_LOW_TARGETING_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/covered_bases.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "DETECT_CELL_BARCODES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr6"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr8"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr9"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr10"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr11"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr12"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr13"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr14"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr15"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr16"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr17"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr18"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr19"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chrX"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chrY"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "map",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "excluded_barcodes",
                            "type": "json",
                            "valexp": "MERGE_EXCLUDED_BARCODES.excluded_barcodes",
                            "mode": "reference",
                            "output": "excluded_barcodes",
                            "sweep": false,
                            "sweepRootId": "excluded_barcodes",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0-uf507f8234b/files/excluded_barcodes.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/detect_cell_barcodes"
    },
    {
        "name": "MERGE_CELL_METRICS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summary_jsons",
                            "type": "json",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "summary_jsons",
                            "node": "MERGE_CELL_METRICS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/low_targeting_summary.json",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/join-uf507f81e07/files/gel_bead_doublet_summary.json",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/join-uf507f81e07/files/barcode_multiplets_summary.json",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_calling_summary.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_GEL_BEAD_DOUBLET_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_BARCODE_MULTIPLETS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.DETECT_CELL_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_CELL_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/merge_summary_metrics"
    },
    {
        "name": "MERGE_EXCLUDED_BARCODES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_exclusions",
                            "type": "json",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_exclusions",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/join-uf507f81e07/files/barcode_multiplets.json",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/join-uf507f81e07/files/gel_bead_doublet_barcodes.json",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/low_targeting_barcodes.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_BARCODE_MULTIPLETS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_GEL_BEAD_DOUBLET_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.MERGE_EXCLUDED_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/merge_excluded_barcodes"
    },
    {
        "name": "REMOVE_BARCODE_MULTIPLETS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_BARCODE_MULTIPLETS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr1",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr2",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr3",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr4",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr5",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr6",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr7",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr8",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr9",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr10",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr11",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr12",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr13",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr14",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr15",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr16",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr17",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr18",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chr19",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chrX",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "contig": "chrY",
                            "gem_group": "1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_BARCODE_MULTIPLETS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "REMOVE_LOW_TARGETING_BARCODES.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "REMOVE_LOW_TARGETING_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/barcode_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_BARCODE_MULTIPLETS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_BARCODE_MULTIPLETS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/remove_barcode_multiplets"
    },
    {
        "name": "REMOVE_GEL_BEAD_DOUBLET_BARCODES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_GEL_BEAD_DOUBLET_BARCODES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr1",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr2",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr3",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr4",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr5",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr6",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr7",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr8",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr9",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr10",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr11",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr12",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr13",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr14",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr15",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr16",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr17",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr18",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chr19",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chrX",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "contig": "chrY",
                            "valid_barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/split-uf507f81e07/files/valid_barcodes.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_GEL_BEAD_DOUBLET_BARCODES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "REMOVE_LOW_TARGETING_BARCODES.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "REMOVE_LOW_TARGETING_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join-uf507f81bfb/files/barcode_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_GEL_BEAD_DOUBLET_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_GEL_BEAD_DOUBLET_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/remove_gel_bead_doublet_barcodes"
    },
    {
        "name": "REMOVE_LOW_TARGETING_BARCODES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr6"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr8"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr9"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr10"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr11"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr12"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr13"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr14"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr15"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr16"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr17"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr18"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chr19"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chrX"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "contig": "chrY"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/REMOVE_LOW_TARGETING_BARCODES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PEAK_CALLER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._PRODUCE_CELL_BARCODES.REMOVE_LOW_TARGETING_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/cell_calling/remove_low_targeting_barcodes"
    },
    {
        "name": "_SORT_AND_MARK_DUPS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "bc_counts",
                            "type": "json",
                            "valexp": "_ALIGNER.bc_counts",
                            "mode": "reference",
                            "output": "bc_counts",
                            "sweep": false,
                            "sweepRootId": "bc_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/bc_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "bam",
                            "valexp": "_ALIGNER.align",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk00-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk01-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk02-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk03-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk04-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk05-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk06-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk07-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk08-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk09-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk10-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk11-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk12-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk13-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk14-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk15-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk16-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk17-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk18-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk19-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk20-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk21-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk22-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk23-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk24-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk25-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk26-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk27-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk28-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk29-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk30-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk31-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk32-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk33-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk34-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk35-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk36-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk37-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk38-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk39-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk40-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk41-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk42-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk43-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk44-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk45-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk46-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk47-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk48-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk49-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk50-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk51-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk52-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk53-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk54-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk55-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk56-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk57-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk58-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk59-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk60-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk61-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk62-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk63-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk64-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk65-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk66-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk67-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk68-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk69-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk70-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk71-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk72-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk73-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk74-uf507f75580/files/default.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "_ALIGNER.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_bam",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_bam",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "possorted_bam_index",
                            "type": "bam.bai",
                            "valexp": "MARK_DUPLICATES.index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_bam_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_mapping",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.singlecell_mapping",
                            "mode": "reference",
                            "output": "singlecell_mapping",
                            "sweep": false,
                            "sweepRootId": "singlecell_mapping",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/singlecell_mapping.csv",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "MARK_DUPLICATES.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "MARK_DUPLICATES.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "read_paired_bam",
                            "type": "bam",
                            "valexp": "ATTACH_BCS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "read_paired_bam",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.MARK_DUPLICATES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.ATTACH_BCS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ATTACH_BCS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.ATTACH_BCS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk00-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk01-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk02-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk03-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk04-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk05-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk06-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk07-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk08-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk09-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk10-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk11-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk12-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk13-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk14-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk15-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk16-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk17-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk18-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk19-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk20-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk21-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk22-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk23-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk24-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk25-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk26-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk27-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk28-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk29-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk30-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk31-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk32-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk33-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk34-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk35-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk36-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk37-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk38-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk39-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk40-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk41-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk42-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk43-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk44-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk45-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk46-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk47-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk48-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk49-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk50-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk51-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk52-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk53-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk54-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk55-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk56-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk57-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk58-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk59-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk60-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk61-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk62-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk63-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk64-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk65-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk66-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk67-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk68-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk69-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk70-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk71-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk72-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk73-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "align_chunk": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk74-uf507f75580/files/default.bam",
                            "chunk": {
                                "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                "gem_group": 1,
                                "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                "read2": null,
                                "barcode_reverse_complement": false,
                                "reads_interleaved": true
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "exclude_non_bc_reads",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_non_bc_reads",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "bc_confidence_threshold",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "bc_confidence_threshold",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "bc_counts",
                            "type": "json",
                            "valexp": "self.bc_counts",
                            "mode": "reference",
                            "output": "bc_counts",
                            "sweep": false,
                            "sweepRootId": "bc_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/bc_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "bam",
                            "valexp": "self.align",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk00-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk01-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk02-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk03-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk04-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk05-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk06-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk07-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk08-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk09-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk10-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk11-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk12-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk13-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk14-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk15-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk16-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk17-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk18-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk19-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk20-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk21-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk22-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk23-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk24-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk25-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk26-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk27-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk28-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk29-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk30-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk31-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk32-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk33-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk34-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk35-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk36-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk37-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk38-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk39-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk40-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk41-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk42-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk43-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk44-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk45-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk46-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk47-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk48-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk49-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk50-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk51-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk52-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk53-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk54-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk55-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk56-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk57-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk58-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk59-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk60-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk61-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk62-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk63-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk64-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk65-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk66-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk67-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk68-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk69-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk70-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk71-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk72-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk73-uf507f75580/files/default.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/ALIGN_READS/fork0/chnk74-uf507f75580/files/default.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "self.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM1.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC1.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI1.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read1.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM2.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC2.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI2.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read2.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM3.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC3.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI3.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read3.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM4.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC4.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI4.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read4.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM5.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC5.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI5.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read5.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM6.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC6.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI6.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read6.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM7.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC7.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI7.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read7.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM8.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC8.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI8.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read8.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM9.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC9.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI9.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read9.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM10.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC10.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI10.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read10.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM11.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC11.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI11.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read11.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM12.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC12.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI12.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read12.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM13.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC13.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI13.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read13.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM14.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC14.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI14.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read14.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM15.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC15.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI15.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read15.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM16.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC16.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI16.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read16.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM17.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC17.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI17.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read17.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM18.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC18.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI18.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read18.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM19.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC19.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI19.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read19.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM20.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC20.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI20.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read20.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM21.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC21.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI21.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read21.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM22.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC22.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI22.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read22.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM23.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC23.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI23.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read23.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM24.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC24.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI24.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read24.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM25.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC25.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI25.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read25.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM26.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC26.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI26.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read26.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM27.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC27.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI27.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read27.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM28.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC28.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI28.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read28.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM29.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC29.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI29.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read29.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM30.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC30.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI30.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read30.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM31.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC31.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI31.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read31.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM32.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC32.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI32.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read32.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM33.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC33.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI33.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read33.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM34.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC34.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI34.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read34.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM35.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC35.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI35.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read35.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM36.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC36.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI36.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read36.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM37.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC37.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI37.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read37.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM38.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC38.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI38.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read38.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM39.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC39.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI39.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read39.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM40.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC40.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI40.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read40.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM41.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC41.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI41.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read41.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM42.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC42.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI42.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read42.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM43.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC43.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI43.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read43.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM44.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC44.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI44.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read44.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM45.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC45.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI45.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read45.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM46.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC46.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI46.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read46.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM47.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC47.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI47.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read47.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM48.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC48.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI48.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read48.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM49.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC49.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI49.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read49.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM50.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC50.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI50.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read50.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM51.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC51.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI51.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read51.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM52.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC52.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI52.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read52.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM53.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC53.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI53.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read53.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM54.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC54.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI54.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read54.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM55.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC55.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI55.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read55.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM56.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC56.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI56.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read56.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM57.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC57.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI57.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read57.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM58.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC58.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI58.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read58.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM59.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC59.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI59.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read59.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM60.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC60.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI60.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read60.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM61.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC61.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI61.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read61.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM62.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC62.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI62.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read62.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM63.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC63.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI63.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read63.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM64.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC64.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI64.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read64.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM65.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC65.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI65.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read65.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM66.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC66.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI66.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read66.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM67.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC67.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI67.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read67.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM68.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC68.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI68.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read68.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM69.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC69.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI69.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read69.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM70.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC70.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI70.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read70.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM71.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC71.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI71.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read71.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM72.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC72.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI72.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read72.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM73.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC73.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI73.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read73.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM74.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC74.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI74.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read74.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                },
                                {
                                    "trim": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/TRIM75.fastq",
                                    "gem_group": 1,
                                    "read_group": "mouse_lung_atac:MissingLibrary:1:HCJM3BBXY:7",
                                    "barcode": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/BC75.fastq",
                                    "sample_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/SI75.fastq",
                                    "read1": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/chnk0-uf507f71b97/files/read75.fastq",
                                    "read2": null,
                                    "barcode_reverse_complement": false,
                                    "reads_interleaved": true
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "paired_end",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.ATTACH_BCS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/attach_bcs"
    },
    {
        "name": "MARK_DUPLICATES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.MARK_DUPLICATES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "48831581519872",
                            "chunk_num": 0,
                            "chunk_start": "96337920",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "97664439689878",
                            "chunk_num": 1,
                            "chunk_start": "48831581519872",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "146494204806776",
                            "chunk_num": 2,
                            "chunk_start": "97664439689878",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "195325590308712",
                            "chunk_num": 3,
                            "chunk_start": "146494204806776",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "244156994034199",
                            "chunk_num": 4,
                            "chunk_start": "195325590308712",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "292988055585100",
                            "chunk_num": 5,
                            "chunk_start": "244156994034199",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "341819144208774",
                            "chunk_num": 6,
                            "chunk_start": "292988055585100",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "390651043316043",
                            "chunk_num": 7,
                            "chunk_start": "341819144208774",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "439481920113629",
                            "chunk_num": 8,
                            "chunk_start": "390651043316043",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "488313142903116",
                            "chunk_num": 9,
                            "chunk_start": "439481920113629",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "537144766825112",
                            "chunk_num": 10,
                            "chunk_start": "488313142903116",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "585986597125333",
                            "chunk_num": 11,
                            "chunk_start": "537144766825112",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "634807063415756",
                            "chunk_num": 12,
                            "chunk_start": "585986597125333",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "683638434502533",
                            "chunk_num": 13,
                            "chunk_start": "634807063415756",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "732469788868950",
                            "chunk_num": 14,
                            "chunk_start": "683638434502533",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "781301124432576",
                            "chunk_num": 15,
                            "chunk_start": "732469788868950",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "830132663682019",
                            "chunk_num": 16,
                            "chunk_start": "781301124432576",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "878964078286721",
                            "chunk_num": 17,
                            "chunk_start": "830132663682019",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "927795136828288",
                            "chunk_num": 18,
                            "chunk_start": "878964078286721",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "976626053715895",
                            "chunk_num": 19,
                            "chunk_start": "927795136828288",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1025457702082862",
                            "chunk_num": 20,
                            "chunk_start": "976626053715895",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1074289068673959",
                            "chunk_num": 21,
                            "chunk_start": "1025457702082862",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1123120002105724",
                            "chunk_num": 22,
                            "chunk_start": "1074289068673959",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1171951516648420",
                            "chunk_num": 23,
                            "chunk_start": "1123120002105724",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1220782727561550",
                            "chunk_num": 24,
                            "chunk_start": "1171951516648420",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1269614166609574",
                            "chunk_num": 25,
                            "chunk_start": "1220782727561550",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1318445647593802",
                            "chunk_num": 26,
                            "chunk_start": "1269614166609574",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1367276809426765",
                            "chunk_num": 27,
                            "chunk_start": "1318445647593802",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1416107927208931",
                            "chunk_num": 28,
                            "chunk_start": "1367276809426765",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1464939291412423",
                            "chunk_num": 29,
                            "chunk_start": "1416107927208931",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1513770431283541",
                            "chunk_num": 30,
                            "chunk_start": "1464939291412423",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1562601860366668",
                            "chunk_num": 31,
                            "chunk_start": "1513770431283541",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1611433042838187",
                            "chunk_num": 32,
                            "chunk_start": "1562601860366668",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1660265993392202",
                            "chunk_num": 33,
                            "chunk_start": "1611433042838187",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1709096008352408",
                            "chunk_num": 34,
                            "chunk_start": "1660265993392202",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1757927359975313",
                            "chunk_num": 35,
                            "chunk_start": "1709096008352408",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1806758733218786",
                            "chunk_num": 36,
                            "chunk_start": "1757927359975313",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1855589881611566",
                            "chunk_num": 37,
                            "chunk_start": "1806758733218786",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1904420791648587",
                            "chunk_num": 38,
                            "chunk_start": "1855589881611566",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "1953252592386712",
                            "chunk_num": 39,
                            "chunk_start": "1904420791648587",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2002083731800730",
                            "chunk_num": 40,
                            "chunk_start": "1953252592386712",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2050914665693519",
                            "chunk_num": 41,
                            "chunk_start": "2002083731800730",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2099746238628172",
                            "chunk_num": 42,
                            "chunk_start": "2050914665693519",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2148577376535527",
                            "chunk_num": 43,
                            "chunk_start": "2099746238628172",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2197408990758189",
                            "chunk_num": 44,
                            "chunk_start": "2148577376535527",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2246240425214948",
                            "chunk_num": 45,
                            "chunk_start": "2197408990758189",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2295071150375905",
                            "chunk_num": 46,
                            "chunk_start": "2246240425214948",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2343902501818204",
                            "chunk_num": 47,
                            "chunk_start": "2295071150375905",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "2392733760750230",
                            "chunk_num": 48,
                            "chunk_start": "2343902501818204",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "chunk_end": "None",
                            "chunk_num": 49,
                            "chunk_start": "2392733760750230",
                            "lane_map": {
                                "HCJM3BBXY_7": {
                                    "tile_height": 49247,
                                    "tiles_per_swath": 28,
                                    "tile_width": 32745,
                                    "num_swaths": 2,
                                    "num_reads_observed": 2000
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "SORT_READS_BY_POS.tagsorted_bam",
                            "mode": "reference",
                            "output": "tagsorted_bam",
                            "sweep": false,
                            "sweepRootId": "input",
                            "node": "SORT_READS_BY_POS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/join-uf507f7e21b/files/tagsorted_bam.bam",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts",
                            "type": "json",
                            "valexp": "self.bc_counts",
                            "mode": "reference",
                            "output": "bc_counts",
                            "sweep": false,
                            "sweepRootId": "bc_counts",
                            "node": "TRIM_READS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/TRIM_READS/fork0/join-uf507f71b87/files/bc_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.SORT_READS_BY_POS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.MARK_DUPLICATES"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._ALIGNER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.MARK_DUPLICATES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/mark_duplicates"
    },
    {
        "name": "SORT_READS_BY_POS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.SORT_READS_BY_POS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_input": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/SORT_READS_BY_POS/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "ATTACH_BCS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "input",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.ATTACH_BCS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER._SORT_AND_MARK_DUPS.SORT_READS_BY_POS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/processing/sort_reads_by_pos"
    },
    {
        "name": "_SC_ATAC_ANALYZER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 30,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_dr_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_bcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_components",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_components",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 15,
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "num_dr_features",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_features",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "filtered_tf_bc_matrix_mex",
                            "type": "path",
                            "valexp": "_PEAK_ANNOTATOR.filtered_tf_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix_mex",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix_mex",
                            "waiting": false
                        },
                        {
                            "id": "feature_bc_matrix",
                            "type": "h5",
                            "valexp": "SUMMARIZE_ANALYSIS.feature_bc_matrix",
                            "mode": "reference",
                            "output": "feature_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "feature_bc_matrix",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "peak_annotation",
                            "type": "tsv",
                            "valexp": "_PEAK_ANNOTATOR.peak_annotation",
                            "mode": "reference",
                            "output": "peak_annotation",
                            "sweep": false,
                            "sweepRootId": "peak_annotation",
                            "node": "ANNOTATE_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join-uf507f81bfb/files/peak_annotation.tsv",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "h5",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "_PEAK_ANNOTATOR.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/ANALYZER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_components",
                            "type": "int",
                            "valexp": "self.num_components",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_components",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 15,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_dr_features",
                            "type": "int",
                            "valexp": "self.num_dr_features",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_features",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 30,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_dr_bcs",
                            "type": "int",
                            "valexp": "self.num_dr_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_bcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/preflight/atac_analyzer"
    },
    {
        "name": "CLUSTER_CELLS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.CLUSTER_CELLS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 2,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 3,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 4,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 5,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 6,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 7,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 8,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 9,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "n_clusters": 10,
                            "transformed_matrix": {
                                "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/chnk8",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "minclusters",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "minclusters",
                            "node": "CLUSTER_CELLS",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        },
                        {
                            "id": "maxclusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "num_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dims",
                            "node": "CLUSTER_CELLS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "reduced_data",
                            "type": "path",
                            "valexp": "REDUCE_DIMENSIONS.reduced_data",
                            "mode": "reference",
                            "output": "reduced_data",
                            "sweep": false,
                            "sweepRootId": "reduced_data",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data",
                            "waiting": false
                        },
                        {
                            "id": "reduction_summary",
                            "type": "map",
                            "valexp": "REDUCE_DIMENSIONS.reduction_summary",
                            "mode": "reference",
                            "output": "reduction_summary",
                            "sweep": false,
                            "sweepRootId": "reduction_summary",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.CLUSTER_CELLS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.CLUSTER_CELLS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/cluster_cells"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_summary",
                            "type": "map",
                            "valexp": "CLUSTER_CELLS.clustering_summary",
                            "mode": "reference",
                            "output": "clustering_summary",
                            "sweep": false,
                            "sweepRootId": "clustering_summary",
                            "node": "CLUSTER_CELLS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/join-uf507f82449/files/clustered_data/lsa/lsa_kmeans_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/join-uf507f82449/files/clustered_data/lsa/lsa_kmeans.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "clustered_data",
                            "type": "path",
                            "valexp": "CLUSTER_CELLS.clustered_data",
                            "mode": "reference",
                            "output": "clustered_data",
                            "sweep": false,
                            "sweepRootId": "clustered_data",
                            "node": "CLUSTER_CELLS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/CLUSTER_CELLS/fork0/join-uf507f82449/files/clustered_data",
                            "waiting": false
                        },
                        {
                            "id": "graph_clustering_summary",
                            "type": "map",
                            "valexp": "RUN_GRAPH_CLUSTERING.graph_clustering_summary",
                            "mode": "reference",
                            "output": "graph_clustering_summary",
                            "sweep": false,
                            "sweepRootId": "graph_clustering_summary",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-uf507f82449/files/knn_clusters/lsa/clusters_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-uf507f82449/files/knn_clusters/lsa/clusters.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "knn_clusters",
                            "type": "path",
                            "valexp": "RUN_GRAPH_CLUSTERING.knn_clusters",
                            "mode": "reference",
                            "output": "knn_clusters",
                            "sweep": false,
                            "sweepRootId": "knn_clusters",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-uf507f82449/files/knn_clusters",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.CLUSTER_CELLS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/combine_clustering"
    },
    {
        "name": "PERFORM_DIFFERENTIAL_ANALYSIS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PERFORM_DIFFERENTIAL_ANALYSIS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 7,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 8,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 9,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 10,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 11,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 12,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 13,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 14,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 15,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 16,
                            "clustering_key": "graphclust",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 7,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 8,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 9,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 10,
                            "clustering_key": "kmeans_10_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_2_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_2_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_3_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_3_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_3_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_4_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_4_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_4_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_4_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_5_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_5_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_5_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_5_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_5_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "kmeans_6_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 7,
                            "clustering_key": "kmeans_7_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 7,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 8,
                            "clustering_key": "kmeans_8_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 1,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 2,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 3,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 4,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 5,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 6,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 7,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 8,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 10,
                            "cluster": 9,
                            "clustering_key": "kmeans_9_clusters",
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "clustering",
                            "type": "path",
                            "valexp": "COMBINE_CLUSTERING.clustering",
                            "mode": "reference",
                            "output": "clustering",
                            "sweep": false,
                            "sweepRootId": "clustering",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering",
                            "waiting": false
                        },
                        {
                            "id": "clustering_summary",
                            "type": "map",
                            "valexp": "COMBINE_CLUSTERING.clustering_summary",
                            "mode": "reference",
                            "output": "clustering_summary",
                            "sweep": false,
                            "sweepRootId": "clustering_summary",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering/lsa/lsa_clustering.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "_PEAK_ANNOTATOR.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PERFORM_DIFFERENTIAL_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PERFORM_DIFFERENTIAL_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PERFORM_DIFFERENTIAL_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/perform_differential_analysis"
    },
    {
        "name": "PROJECT_TSNE",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PROJECT_TSNE",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "method": "lsa",
                            "transformed_matrix_h5": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5",
                            "tsne_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reduction_summary",
                            "type": "map",
                            "valexp": "REDUCE_DIMENSIONS.reduction_summary",
                            "mode": "reference",
                            "output": "reduction_summary",
                            "sweep": false,
                            "sweepRootId": "reduction_summary",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 30,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "reduced_data",
                            "type": "path",
                            "valexp": "REDUCE_DIMENSIONS.reduced_data",
                            "mode": "reference",
                            "output": "reduced_data",
                            "sweep": false,
                            "sweepRootId": "reduced_data",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data",
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PROJECT_TSNE"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PROJECT_TSNE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/project_tsne"
    },
    {
        "name": "REDUCE_DIMENSIONS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "method": "lsa"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_dims",
                            "type": "int",
                            "valexp": "self.num_components",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_components",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": 15,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_dr_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_bcs",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_features",
                            "type": "int",
                            "valexp": "self.num_dr_features",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_dr_features",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/reduce_dimensions"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "k_nearest": 245,
                            "method": "lsa",
                            "neighbor_index": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-uf507f82449/files/neighbor_index_lsa.pickle",
                            "row_start": 0,
                            "submatrix": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-uf507f82449/files/lsa_0_submatrix.h5",
                            "total_rows": 9074,
                            "use_bcs": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-uf507f82449/files/use_bcs.h5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "factorization",
                            "type": "string",
                            "valexp": "self.factorization",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "factorization",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                "lsa"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "balltree_leaf_size",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "similarity_type",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "reduced_data",
                            "type": "path",
                            "valexp": "REDUCE_DIMENSIONS.reduced_data",
                            "mode": "reference",
                            "output": "reduced_data",
                            "sweep": false,
                            "sweepRootId": "reduced_data",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data",
                            "waiting": false
                        },
                        {
                            "id": "reduction_summary",
                            "type": "map",
                            "valexp": "REDUCE_DIMENSIONS.reduction_summary",
                            "mode": "reference",
                            "output": "reduction_summary",
                            "sweep": false,
                            "sweepRootId": "reduction_summary",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "_SC_ATAC_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/run_graph_clustering"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "_PEAK_ANNOTATOR.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "tf_propZ_matrix",
                            "type": "gz",
                            "valexp": "_PEAK_ANNOTATOR.tf_propZ_matrix",
                            "mode": "reference",
                            "output": "tf_propZ_matrix",
                            "sweep": false,
                            "sweepRootId": "tf_propZ_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/tf_propZ_matrix.gz",
                            "waiting": false
                        },
                        {
                            "id": "clustering",
                            "type": "path",
                            "valexp": "COMBINE_CLUSTERING.clustering",
                            "mode": "reference",
                            "output": "clustering",
                            "sweep": false,
                            "sweepRootId": "clustering",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering",
                            "waiting": false
                        },
                        {
                            "id": "clustering_summary",
                            "type": "map",
                            "valexp": "COMBINE_CLUSTERING.clustering_summary",
                            "mode": "reference",
                            "output": "clustering_summary",
                            "sweep": false,
                            "sweepRootId": "clustering_summary",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uf507f82466/files/clustering/lsa/lsa_clustering.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "tsne",
                            "type": "path",
                            "valexp": "PROJECT_TSNE.tsne",
                            "mode": "reference",
                            "output": "tsne",
                            "sweep": false,
                            "sweepRootId": "tsne",
                            "node": "PROJECT_TSNE",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/join-uf507f82449/files/tsne",
                            "waiting": false
                        },
                        {
                            "id": "enrichment_analysis",
                            "type": "path",
                            "valexp": "PERFORM_DIFFERENTIAL_ANALYSIS.enrichment_analysis",
                            "mode": "reference",
                            "output": "enrichment_analysis",
                            "sweep": false,
                            "sweepRootId": "enrichment_analysis",
                            "node": "PERFORM_DIFFERENTIAL_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/join-uf507f824b5/files/enrichment_analysis",
                            "waiting": false
                        },
                        {
                            "id": "peak_annotation",
                            "type": "tsv",
                            "valexp": "_PEAK_ANNOTATOR.peak_annotation",
                            "mode": "reference",
                            "output": "peak_annotation",
                            "sweep": false,
                            "sweepRootId": "peak_annotation",
                            "node": "ANNOTATE_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join-uf507f81bfb/files/peak_annotation.tsv",
                            "waiting": false
                        },
                        {
                            "id": "reduction_summary",
                            "type": "map",
                            "valexp": "REDUCE_DIMENSIONS.reduction_summary",
                            "mode": "reference",
                            "output": "reduction_summary",
                            "sweep": false,
                            "sweepRootId": "reduction_summary",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data/lsa/lsa.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "tsne_summary",
                            "type": "map",
                            "valexp": "PROJECT_TSNE.tsne_summary",
                            "mode": "reference",
                            "output": "tsne_summary",
                            "sweep": false,
                            "sweepRootId": "tsne_summary",
                            "node": "PROJECT_TSNE",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/join-uf507f82449/files/tsne/lsa_tsne_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PROJECT_TSNE/fork0/join-uf507f82449/files/tsne/lsa_tsne.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "enrichment_analysis_summary",
                            "type": "map",
                            "valexp": "PERFORM_DIFFERENTIAL_ANALYSIS.enrichment_analysis_summary",
                            "mode": "reference",
                            "output": "enrichment_analysis_summary",
                            "sweep": false,
                            "sweepRootId": "enrichment_analysis_summary",
                            "node": "PERFORM_DIFFERENTIAL_ANALYSIS",
                            "matchedFork": 0,
                            "value": {
                                "csv": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/join-uf507f824b5/files/enrichment_analysis/lsa/lsa_enrichment_csv"
                                },
                                "h5": {
                                    "lsa": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/PERFORM_DIFFERENTIAL_ANALYSIS/fork0/join-uf507f824b5/files/enrichment_analysis/lsa/lsa_enrichment_h5.h5"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "reduced_data",
                            "type": "path",
                            "valexp": "REDUCE_DIMENSIONS.reduced_data",
                            "mode": "reference",
                            "output": "reduced_data",
                            "sweep": false,
                            "sweepRootId": "reduced_data",
                            "node": "REDUCE_DIMENSIONS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/REDUCE_DIMENSIONS/fork0/join-uf507f8241c/files/reduced_data",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PROJECT_TSNE",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.PERFORM_DIFFERENTIAL_ANALYSIS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.REDUCE_DIMENSIONS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/summarize_analysis"
    },
    {
        "name": "_PEAK_ANNOTATOR",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "pwm_threshold",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pwm_threshold",
                            "node": "_PEAK_ANNOTATOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "tf_propZ_matrix",
                            "type": "gz",
                            "valexp": "GENERATE_TF_MATRIX.tf_propZ_matrix",
                            "mode": "reference",
                            "output": "tf_propZ_matrix",
                            "sweep": false,
                            "sweepRootId": "tf_propZ_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/tf_propZ_matrix.gz",
                            "waiting": false
                        },
                        {
                            "id": "peak_annotation",
                            "type": "tsv",
                            "valexp": "ANNOTATE_PEAKS.peak_annotation",
                            "mode": "reference",
                            "output": "peak_annotation",
                            "sweep": false,
                            "sweepRootId": "peak_annotation",
                            "node": "ANNOTATE_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join-uf507f81bfb/files/peak_annotation.tsv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix",
                            "type": "h5",
                            "valexp": "GENERATE_TF_MATRIX.filtered_tf_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_tf_bc_matrix_mex",
                            "type": "path",
                            "valexp": "GENERATE_TF_MATRIX.filtered_tf_bc_matrix_mex",
                            "mode": "reference",
                            "output": "filtered_tf_bc_matrix_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_tf_bc_matrix_mex",
                            "node": "GENERATE_TF_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join-uf507f8241c/files/filtered_tf_bc_matrix_mex",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.GENERATE_TF_MATRIX",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.ANNOTATE_PEAKS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANNOTATE_PEAKS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.ANNOTATE_PEAKS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 4798,
                            "chunk_start": 0,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 9597,
                            "chunk_start": 4798,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 14395,
                            "chunk_start": 9597,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 19194,
                            "chunk_start": 14395,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 23992,
                            "chunk_start": 19194,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 28791,
                            "chunk_start": 23992,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 33589,
                            "chunk_start": 28791,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 38388,
                            "chunk_start": 33589,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 43186,
                            "chunk_start": 38388,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 47985,
                            "chunk_start": 43186,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 52784,
                            "chunk_start": 47985,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 57582,
                            "chunk_start": 52784,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 62381,
                            "chunk_start": 57582,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 67179,
                            "chunk_start": 62381,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 71978,
                            "chunk_start": 67179,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 76776,
                            "chunk_start": 71978,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 81575,
                            "chunk_start": 76776,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 86373,
                            "chunk_start": 81575,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 91172,
                            "chunk_start": 86373,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_end": 95971,
                            "chunk_start": 91172,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/ANNOTATE_PEAKS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.ANNOTATE_PEAKS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/annotate_peaks"
    },
    {
        "name": "COMPUTE_GC_DISTRIBUTION",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.COMPUTE_GC_DISTRIBUTION",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.COMPUTE_GC_DISTRIBUTION"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/compute_gc_dist"
    },
    {
        "name": "GENERATE_TF_MATRIX",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.GENERATE_TF_MATRIX",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/GENERATE_TF_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "peak_motif_hits",
                            "type": "bed",
                            "valexp": "SCAN_MOTIFS.peak_motif_hits",
                            "mode": "reference",
                            "output": "peak_motif_hits",
                            "sweep": false,
                            "sweepRootId": "peak_motif_hits",
                            "node": "SCAN_MOTIFS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/join-uf507f81d67/files/peak_motif_hits.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.GENERATE_TF_MATRIX"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.SCAN_MOTIFS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.GENERATE_TF_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/generate_tf_matrix"
    },
    {
        "name": "SCAN_MOTIFS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.SCAN_MOTIFS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.0_0.392543859649",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.392543859649_0.413926499033",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.413926499033_0.427480916031",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.427480916031_0.437636761488",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.437636761488_0.44630071599",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.44630071599_0.453908984831",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.453908984831_0.461059190031",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.461059190031_0.467741935484",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.467741935484_0.474074074074",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.474074074074_0.480099502488",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.480099502488_0.486111111111",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.486111111111_0.492125984252",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.492125984252_0.498269896194",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.498269896194_0.504132231405",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.504132231405_0.510263929619",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.510263929619_0.516666666667",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.516666666667_0.523539153064",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.523539153064_0.530612244898",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.530612244898_0.538461538462",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.538461538462_0.547079856973",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.547079856973_0.557046979866",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.557046979866_0.569542253521",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.569542253521_0.586558044807",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.586558044807_0.616368286445",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "GCdict": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/split-uf507f81d67/files/GCdict_0.616368286445_1.0",
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "skip": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/SCAN_MOTIFS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "globalGCdict",
                            "type": "pickle",
                            "valexp": "COMPUTE_GC_DISTRIBUTION.GCdict",
                            "mode": "reference",
                            "output": "GCdict",
                            "sweep": false,
                            "sweepRootId": "globalGCdict",
                            "node": "COMPUTE_GC_DISTRIBUTION",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/_PEAK_ANNOTATOR/COMPUTE_GC_DISTRIBUTION/fork0/join-uf507f81bfb/files/GCdict.pickle",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "pwm_threshold",
                            "type": "float",
                            "valexp": "self.pwm_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pwm_threshold",
                            "node": "_PEAK_ANNOTATOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.COMPUTE_GC_DISTRIBUTION",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.SCAN_MOTIFS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER._PEAK_ANNOTATOR.SCAN_MOTIFS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/analysis/scan_motifs"
    },
    {
        "name": "_SC_ATAC_METRIC_COLLECTOR",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "singlecell_mapping",
                            "type": "csv",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.singlecell_mapping",
                            "mode": "reference",
                            "output": "singlecell_mapping",
                            "sweep": false,
                            "sweepRootId": "singlecell_mapping",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/singlecell_mapping.csv",
                            "waiting": false
                        },
                        {
                            "id": "read_paired_bam",
                            "type": "bam",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.read_paired_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "read_paired_bam",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.cell_barcodes",
                            "mode": "reference",
                            "output": "cell_barcodes",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_cells",
                            "type": "csv",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.singlecell_cells",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell_cells",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/singlecell.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "singlecell_complexity",
                            "type": "json",
                            "valexp": "ESTIMATE_LIBRARY_COMPLEXITY.singlecell_complexity",
                            "mode": "reference",
                            "output": "singlecell_complexity",
                            "sweep": false,
                            "sweepRootId": "singlecell_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/singlecell_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "complexity_summary",
                            "type": "json",
                            "valexp": "ESTIMATE_LIBRARY_COMPLEXITY.complexity_summary",
                            "mode": "reference",
                            "output": "complexity_summary",
                            "sweep": false,
                            "sweepRootId": "complexity_summary",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/complexity_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "ctcf_relpos",
                            "type": "csv",
                            "valexp": "GENERATE_SINGLECELL_TARGETING.ctcf_relpos",
                            "mode": "reference",
                            "output": "ctcf_relpos",
                            "sweep": false,
                            "sweepRootId": "ctcf_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/ctcf_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_results",
                            "type": "json",
                            "valexp": "MERGE_SINGLECELL_METRICS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "singlecell_results",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "basic_summary",
                            "type": "json",
                            "valexp": "GENERATE_SEQUENCING_METRICS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "basic_summary",
                            "node": "GENERATE_SEQUENCING_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join-uf507f7e21b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "insert_summary",
                            "type": "json",
                            "valexp": "REPORT_INSERT_SIZES.insert_summary",
                            "mode": "reference",
                            "output": "insert_summary",
                            "sweep": false,
                            "sweepRootId": "insert_summary",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "bulk_complexity",
                            "type": "json",
                            "valexp": "ESTIMATE_LIBRARY_COMPLEXITY.bulk_complexity",
                            "mode": "reference",
                            "output": "bulk_complexity",
                            "sweep": false,
                            "sweepRootId": "bulk_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/bulk_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "tss_relpos",
                            "type": "csv",
                            "valexp": "GENERATE_SINGLECELL_TARGETING.tss_relpos",
                            "mode": "reference",
                            "output": "tss_relpos",
                            "sweep": false,
                            "sweepRootId": "tss_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/tss_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "MERGE_SINGLECELL_METRICS.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "enrichment_results",
                            "type": "json",
                            "valexp": "REPORT_TSS_CTCF.summary_metrics",
                            "mode": "reference",
                            "output": "summary_metrics",
                            "sweep": false,
                            "sweepRootId": "enrichment_results",
                            "node": "REPORT_TSS_CTCF",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/chnk0-uf507f82044/files/summary_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "insert_sizes",
                            "type": "csv",
                            "valexp": "REPORT_INSERT_SIZES.insert_sizes",
                            "mode": "reference",
                            "output": "insert_sizes",
                            "sweep": false,
                            "sweepRootId": "insert_sizes",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_sizes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.ESTIMATE_LIBRARY_COMPLEXITY",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SINGLECELL_TARGETING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.MERGE_SINGLECELL_METRICS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SEQUENCING_METRICS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_INSERT_SIZES",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_TSS_CTCF",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ESTIMATE_LIBRARY_COMPLEXITY",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.ESTIMATE_LIBRARY_COMPLEXITY",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_0.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_1.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_2.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_3.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_4.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_5.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_6.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_7.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_8.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_9.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_10.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_11.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_12.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_13.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_14.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_15.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_16.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_17.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_18.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/split-uf507f823cd/files/barcode_19.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sequencing_summary",
                            "type": "json",
                            "valexp": "GENERATE_SEQUENCING_METRICS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "sequencing_summary",
                            "node": "GENERATE_SEQUENCING_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join-uf507f7e21b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "csv",
                            "valexp": "self.cell_barcodes",
                            "mode": "reference",
                            "output": "cell_barcodes",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/cell_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SEQUENCING_METRICS",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.ESTIMATE_LIBRARY_COMPLEXITY"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.ESTIMATE_LIBRARY_COMPLEXITY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/estimate_library_complexity"
    },
    {
        "name": "GENERATE_SEQUENCING_METRICS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SEQUENCING_METRICS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_bam": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "self.read_paired_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "read_paired_bam",
                            "node": "ATTACH_BCS",
                            "matchedFork": 0,
                            "value": [
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk00-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk01-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk02-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk03-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk04-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk05-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk06-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk07-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk08-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk09-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk10-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk11-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk12-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk13-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk14-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk15-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk16-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk17-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk18-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk19-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk20-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk21-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk22-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk23-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk24-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk25-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk26-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk27-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk28-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk29-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk30-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk31-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk32-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk33-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk34-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk35-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk36-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk37-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk38-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk39-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk40-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk41-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk42-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk43-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk44-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk45-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk46-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk47-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk48-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk49-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk50-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk51-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk52-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk53-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk54-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk55-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk56-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk57-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk58-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk59-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk60-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk61-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk62-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk63-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk64-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk65-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk66-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk67-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk68-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk69-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk70-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk71-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk72-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk73-uf507f79b2c/files/output.bam",
                                "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/ATTACH_BCS/fork0/chnk74-uf507f79b2c/files/output.bam"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SEQUENCING_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/generate_sequencing_metrics"
    },
    {
        "name": "GENERATE_SINGLECELL_TARGETING",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SINGLECELL_TARGETING",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr6"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr8"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr9"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr10"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr11"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr12"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr13"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr14"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr15"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr16"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr17"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr18"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chr19"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chrX"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "contig": "chrY"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "fragments_index",
                            "type": "tsv.gz.tbi",
                            "valexp": "self.fragments_index",
                            "mode": "reference",
                            "output": "fragments_index",
                            "sweep": false,
                            "sweepRootId": "fragments_index",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments_index.tsv.gz.tbi",
                            "waiting": false
                        },
                        {
                            "id": "peaks",
                            "type": "bed",
                            "valexp": "self.peaks",
                            "mode": "reference",
                            "output": "peaks",
                            "sweep": false,
                            "sweepRootId": "peaks",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peaks.bed",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SINGLECELL_TARGETING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/generate_singlecell_targeting"
    },
    {
        "name": "MERGE_SINGLECELL_METRICS",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.MERGE_SINGLECELL_METRICS",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "singlecell_mapping",
                            "type": "csv",
                            "valexp": "self.singlecell_mapping",
                            "mode": "reference",
                            "output": "singlecell_mapping",
                            "sweep": false,
                            "sweepRootId": "singlecell_mapping",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/singlecell_mapping.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_cells",
                            "type": "csv",
                            "valexp": "self.singlecell_cells",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell_cells",
                            "node": "DETECT_CELL_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/DETECT_CELL_BARCODES/fork0/join-uf507f82353/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_targets",
                            "type": "csv",
                            "valexp": "GENERATE_SINGLECELL_TARGETING.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell_targets",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.MERGE_SINGLECELL_METRICS"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SINGLECELL_TARGETING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.MERGE_SINGLECELL_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/merge_singlecell_metrics"
    },
    {
        "name": "REPORT_INSERT_SIZES",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_INSERT_SIZES",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_0.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_1.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_2.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_3.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_4.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_5.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_6.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_7.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_8.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_9.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_10.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_11.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_12.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_13.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_14.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_15.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_16.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_17.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_18.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_19.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_20.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_21.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_22.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_23.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_24.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_25.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_26.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_27.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_28.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "barcodes": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/split-uf507f812ea/files/barcode_29.txt"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "fragments",
                            "type": "tsv.gz",
                            "valexp": "self.fragments",
                            "mode": "reference",
                            "output": "fragments",
                            "sweep": false,
                            "sweepRootId": "fragments",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_SORT_AND_MARK_DUPS/MARK_DUPLICATES/fork0/join-uf507f7f64c/files/fragments.tsv.gz",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "exclude_non_nuclear",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_non_nuclear",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_INSERT_SIZES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/report_insert_sizes"
    },
    {
        "name": "REPORT_TSS_CTCF",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_TSS_CTCF",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "tss_relpos",
                            "type": "csv",
                            "valexp": "GENERATE_SINGLECELL_TARGETING.tss_relpos",
                            "mode": "reference",
                            "output": "tss_relpos",
                            "sweep": false,
                            "sweepRootId": "tss_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/tss_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "ctcf_relpos",
                            "type": "csv",
                            "valexp": "GENERATE_SINGLECELL_TARGETING.ctcf_relpos",
                            "mode": "reference",
                            "output": "ctcf_relpos",
                            "sweep": false,
                            "sweepRootId": "ctcf_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/ctcf_relpos.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.GENERATE_SINGLECELL_TARGETING",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR.REPORT_TSS_CTCF"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/metrics/report_tss_ctcf"
    },
    {
        "name": "_SC_ATAC_REPORTER",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER",
        "type": "pipeline",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "insert_summary",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.insert_summary",
                            "mode": "reference",
                            "output": "insert_summary",
                            "sweep": false,
                            "sweepRootId": "insert_summary",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_complexity",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.singlecell_complexity",
                            "mode": "reference",
                            "output": "singlecell_complexity",
                            "sweep": false,
                            "sweepRootId": "singlecell_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/singlecell_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_summary",
                            "type": "json",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.cell_calling_summary",
                            "mode": "reference",
                            "output": "merged_summary",
                            "sweep": false,
                            "sweepRootId": "cell_calling_summary",
                            "node": "MERGE_CELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/chnk0-uf507f823cd/files/merged_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "basic_summary",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.basic_summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "basic_summary",
                            "node": "GENERATE_SEQUENCING_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join-uf507f7e21b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_results",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.singlecell_results",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "singlecell_results",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "enrichment_results",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.enrichment_results",
                            "mode": "reference",
                            "output": "summary_metrics",
                            "sweep": false,
                            "sweepRootId": "enrichment_results",
                            "node": "REPORT_TSS_CTCF",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/chnk0-uf507f82044/files/summary_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "bulk_complexity",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.bulk_complexity",
                            "mode": "reference",
                            "output": "bulk_complexity",
                            "sweep": false,
                            "sweepRootId": "bulk_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/bulk_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "complexity_summary",
                            "type": "json",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.complexity_summary",
                            "mode": "reference",
                            "output": "complexity_summary",
                            "sweep": false,
                            "sweepRootId": "complexity_summary",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/complexity_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "peak_summary",
                            "type": "json",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.peak_metrics",
                            "mode": "reference",
                            "output": "peak_metrics",
                            "sweep": false,
                            "sweepRootId": "peak_summary",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peak_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "h5",
                            "valexp": "_SC_ATAC_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "excluded_barcodes",
                            "type": "json",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.excluded_barcodes",
                            "mode": "reference",
                            "output": "excluded_barcodes",
                            "sweep": false,
                            "sweepRootId": "excluded_barcodes",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0-uf507f8234b/files/excluded_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "downsample_info",
                            "type": "json",
                            "valexp": "_BASIC_SC_ATAC_COUNTER.downsample_info",
                            "mode": "reference",
                            "output": "downsample_info",
                            "sweep": false,
                            "sweepRootId": "downsample_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/chnk0-uf507f71b78/files/downsample_info.json",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "tss_relpos",
                            "type": "csv",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.tss_relpos",
                            "mode": "reference",
                            "output": "tss_relpos",
                            "sweep": false,
                            "sweepRootId": "tss_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/tss_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "ctcf_relpos",
                            "type": "csv",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.ctcf_relpos",
                            "mode": "reference",
                            "output": "ctcf_relpos",
                            "sweep": false,
                            "sweepRootId": "ctcf_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/ctcf_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "sc_insert_sizes",
                            "type": "csv",
                            "valexp": "_SC_ATAC_METRIC_COLLECTOR.insert_sizes",
                            "mode": "reference",
                            "output": "insert_sizes",
                            "sweep": false,
                            "sweepRootId": "sc_insert_sizes",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_sizes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_REPORTS_SINGLECELL.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "CREATE_WEBSUMMARY.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "CREATE_WEBSUMMARY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/chnk0-uf507f838ee/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "summary_csv",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS_SINGLECELL.summary_csv",
                            "mode": "reference",
                            "output": "summary_csv",
                            "sweep": false,
                            "sweepRootId": "summary_csv",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary_csv.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.SUMMARIZE_REPORTS_SINGLECELL",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CREATE_WEBSUMMARY",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 1,
                            "__vmem_gb": 19
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/CREATE_WEBSUMMARY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SC_ATAC_COUNTER",
                            "matchedFork": 0,
                            "value": "737K-cratac-v1",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "mouse_lung_atac",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "filtered_peak_bc_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_peak_bc_matrix",
                            "mode": "reference",
                            "output": "filtered_matrix",
                            "sweep": false,
                            "sweepRootId": "filtered_peak_bc_matrix",
                            "node": "FILTER_PEAK_MATRIX",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/FILTER_PEAK_MATRIX/fork0/join-uf507f823cd/files/filtered_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "singlecell",
                            "type": "csv",
                            "valexp": "self.singlecell",
                            "mode": "reference",
                            "output": "singlecell",
                            "sweep": false,
                            "sweepRootId": "singlecell",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/singlecell.csv",
                            "waiting": false
                        },
                        {
                            "id": "tss_relpos",
                            "type": "csv",
                            "valexp": "self.tss_relpos",
                            "mode": "reference",
                            "output": "tss_relpos",
                            "sweep": false,
                            "sweepRootId": "tss_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/tss_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "insert_sizes",
                            "type": "csv",
                            "valexp": "self.sc_insert_sizes",
                            "mode": "reference",
                            "output": "insert_sizes",
                            "sweep": false,
                            "sweepRootId": "sc_insert_sizes",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_sizes.csv",
                            "waiting": false
                        },
                        {
                            "id": "summary_results",
                            "type": "json",
                            "valexp": "SUMMARIZE_REPORTS_SINGLECELL.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary_results",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0-uf507f836b0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "h5",
                            "valexp": "self.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uf507f838c1/files/analysis.h5",
                            "waiting": false
                        },
                        {
                            "id": "excluded_barcodes",
                            "type": "json",
                            "valexp": "self.excluded_barcodes",
                            "mode": "reference",
                            "output": "excluded_barcodes",
                            "sweep": false,
                            "sweepRootId": "excluded_barcodes",
                            "node": "MERGE_EXCLUDED_BARCODES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_EXCLUDED_BARCODES/fork0/chnk0-uf507f8234b/files/excluded_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "ctcf_relpos",
                            "type": "csv",
                            "valexp": "self.ctcf_relpos",
                            "mode": "reference",
                            "output": "ctcf_relpos",
                            "sweep": false,
                            "sweepRootId": "ctcf_relpos",
                            "node": "GENERATE_SINGLECELL_TARGETING",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SINGLECELL_TARGETING/fork0/join-uf507f81bfb/files/ctcf_relpos.csv",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "bc_in_read": 1,
                                    "bc_length": 16,
                                    "gem_group": null,
                                    "lanes": null,
                                    "library": "LibraryNotSpecified",
                                    "read_path": "/share/dstep/data/10X_ATAC_Lung",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "10X_ATAC_Lung"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "bulk_complexity",
                            "type": "json",
                            "valexp": "self.bulk_complexity",
                            "mode": "reference",
                            "output": "bulk_complexity",
                            "sweep": false,
                            "sweepRootId": "bulk_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/bulk_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_complexity",
                            "type": "json",
                            "valexp": "self.singlecell_complexity",
                            "mode": "reference",
                            "output": "singlecell_complexity",
                            "sweep": false,
                            "sweepRootId": "singlecell_complexity",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/singlecell_complexity.json",
                            "waiting": false
                        },
                        {
                            "id": "debug",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "debug",
                            "node": "CREATE_WEBSUMMARY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.SUMMARIZE_REPORTS_SINGLECELL",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_ANALYZER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.CREATE_WEBSUMMARY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/reporter/create_websummary"
    },
    {
        "name": "SUMMARIZE_REPORTS_SINGLECELL",
        "fqname": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.SUMMARIZE_REPORTS_SINGLECELL",
        "type": "stage",
        "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL",
        "state": "complete",
        "metadata": {
            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_REPORTER/SUMMARIZE_REPORTS_SINGLECELL/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "complexity_summary",
                            "type": "json",
                            "valexp": "self.complexity_summary",
                            "mode": "reference",
                            "output": "complexity_summary",
                            "sweep": false,
                            "sweepRootId": "complexity_summary",
                            "node": "ESTIMATE_LIBRARY_COMPLEXITY",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/ESTIMATE_LIBRARY_COMPLEXITY/fork0/join-uf507f823cd/files/complexity_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "peak_results",
                            "type": "json",
                            "valexp": "self.peak_summary",
                            "mode": "reference",
                            "output": "peak_metrics",
                            "sweep": false,
                            "sweepRootId": "peak_summary",
                            "node": "DETECT_PEAKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PEAK_CALLER/DETECT_PEAKS/fork0/join-uf507f819ce/files/peak_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "basic_results",
                            "type": "json",
                            "valexp": "self.basic_summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "basic_summary",
                            "node": "GENERATE_SEQUENCING_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/GENERATE_SEQUENCING_METRICS/fork0/join-uf507f7e21b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "insert_summary",
                            "type": "json",
                            "valexp": "self.insert_summary",
                            "mode": "reference",
                            "output": "insert_summary",
                            "sweep": false,
                            "sweepRootId": "insert_summary",
                            "node": "REPORT_INSERT_SIZES",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_INSERT_SIZES/fork0/join-uf507f812ea/files/insert_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "singlecell_results",
                            "type": "json",
                            "valexp": "self.singlecell_results",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "singlecell_results",
                            "node": "MERGE_SINGLECELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/MERGE_SINGLECELL_METRICS/fork0/chnk0-uf507f823cd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "contam_results",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "contam_results",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "downsample_info",
                            "type": "json",
                            "valexp": "self.downsample_info",
                            "mode": "reference",
                            "output": "downsample_info",
                            "sweep": false,
                            "sweepRootId": "downsample_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_ALIGNER/SETUP_CHUNKS/fork0/chnk0-uf507f71b78/files/downsample_info.json",
                            "waiting": false
                        },
                        {
                            "id": "enrichment_results",
                            "type": "json",
                            "valexp": "self.enrichment_results",
                            "mode": "reference",
                            "output": "summary_metrics",
                            "sweep": false,
                            "sweepRootId": "enrichment_results",
                            "node": "REPORT_TSS_CTCF",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_SC_ATAC_METRIC_COLLECTOR/REPORT_TSS_CTCF/fork0/chnk0-uf507f82044/files/summary_metrics.json",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "string",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_ATAC_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/share/dstep/data/refdata-cellranger-atac-mm10-1.2.0/",
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_summary",
                            "type": "json",
                            "valexp": "self.cell_calling_summary",
                            "mode": "reference",
                            "output": "merged_summary",
                            "sweep": false,
                            "sweepRootId": "cell_calling_summary",
                            "node": "MERGE_CELL_METRICS",
                            "matchedFork": 0,
                            "value": "/home/dstep01/analysis_scATAC/mouse_lung_atac/SC_ATAC_COUNTER_CS/SC_ATAC_COUNTER/_BASIC_SC_ATAC_COUNTER/_PRODUCE_CELL_BARCODES/MERGE_CELL_METRICS/fork0/chnk0-uf507f823cd/files/merged_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "error_results_summary",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "error_results_summary",
                            "node": "SUMMARIZE_REPORTS_SINGLECELL",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_METRIC_COLLECTOR",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.SUMMARIZE_REPORTS_SINGLECELL"
            },
            {
                "from": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._BASIC_SC_ATAC_COUNTER",
                "to": "ID.mouse_lung_atac.SC_ATAC_COUNTER_CS.SC_ATAC_COUNTER._SC_ATAC_REPORTER.SUMMARIZE_REPORTS_SINGLECELL"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/yshare3/share/dstep/tools/cellranger-atac-1.2.0/cellranger-atac-cs/1.2.0/mro/atac/stages/reporter/summarize_reports_singlecell"
    }
]